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Handling of the multiple alignments was done using SEAVIEW [ 29].
Handling of the multiple alignments was done using BioEdit sequence alignment editor [ 68].
Handling of the multiple alignments was done using SEAVIEW [ 64] or GeneDoc [ 65].
Bootstrap re-sampling (1,000 data sets) of multiple alignments was performed to test the statistical robustness of the trees.
If a read had multiple alignments to the same amplicon, the entire region spanning across multiple alignments was kept.
An a priori estimation of the phylogenetic signal present in the multiple alignments was performed by maximum likelihood mapping [ 70].
Similar(52)
Sequence analysis, genomic organization and multiple alignments were performed using Geneious v7.1.8 (Biomatters, Auckland, New Zealand).
Multiple alignments were generated using Multiz.v11.2/roast.v3 (ref. 56) with the tree topology "(Zv9 (hipCom0 ((fr3 gasAcu1) (oryLat2 oreNil2))))".
Multiple alignments were constructed using ClustalW2 program.
Multiple alignments were generated by the MULTALIN program (Corpet 1988).
Multiple alignments were generated at the web site.
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