Sentence examples for multiple alignment that from inspiring English sources

Primers were designed on a multiple alignment that included all known LCDV genotypes.

Thus far, manual curation of a megabase-scale whole-genome multiple alignment that includes rearrangement and lateral gene transfer has proven too time-consuming and difficult.

Mismatches were observed in several Hymenoptera taxa included in this multiple alignment that affected all of the stems.

The compatibility criterion detected breakpoints by identifying neighbouring sites in the multiple alignment that gave incompatible phylogenetic signals.

We can explain this unpredicted behaviour by the fact that reducing the searching space allows the probabilistic searching strategy of GLAM2 to find, with much higher probability, a multiple alignment that is closer to the optimal solution.

In contrast, the JABAWS MSA system introduced here, is an easy to install web services solution for multiple alignment that can run on a desktop or laptop computer, local server or computer cluster.

Some existing clustering software calculates distances from multiple alignments that may be sub-optimal.

In the third pass we use the resulting, highly specific read overlap sets to construct multiple alignments that will be used to correct errors.

Protein weight matrix Gonnet, with Gap Opening 10 and Gap Extension 0.2 was used for multiple alignments that were manually refined in GeneDoc v.2.7.0 [34].

Multiple sequence repeats within the messages and genes allow multiple alignments that are different but equally optimal, of which two have been analyzed extensively [ 23].

The multiple alignments that did not yield cassette estimations may be dispersed gene repeats or have a larger cassette than our parameters allowed (400 bp on each side).