Sentence examples for multiple alignment position from inspiring English sources

The calculated Shannon Entropy per multiple alignment position was subsequently depicted.

Reads with low alignment quality or multiple alignment positions were filtered out.

The mapped partner may have multiple alignment positions across the whole genome.

Only multiple alignment positions where the sequence coverage exceeded 6× were used in order to avoid low quality regions.

**The start and stop positions of the ribosomal RNAs were predicted based on conserved multiple alignment positions and the borders with neighboring genes.

Of these, 279 contig sequences showed unique gene hits, 35 contig sequences showed unique gene hits but multiple alignment positions and seven contig sequences had multiple paralogous gene hits.

A neighbor-joining tree was constructed from the most reliable positions in the OR multiple sequence alignment (positions containing fewer than 1% gaps), using ClustalX v1.83 [41].

Then, structural conservation score was calculated for each residue position using Scorecons [ 22] based on the multiple alignment; and (7) position-specific scoring matrix (PSSM) of a protein was built by running 4 iterations of PSI-BLAST [ 23] against the NCBI non-redundant (nr) database.

Finally, a pHMM is employed to convert the multiple alignment into a position-specific scoring system, representing the probability of each frequent activity at each important position of the alignment as well as the probabilities of both insertion and deletion of infrequent activities.

Another problem is model positions that are overutilized: they represent more than one column of the multiple alignment, and since each position has only one match state, all emitted residues after the first are misrepresented as insertions.

Principal component analysis identifies new axes in a multiple alignment matrix by weighting positions with high co-variation and deemphasizing positions that show little co-variation with other positions.