Sentence examples for multiple alignment framework from inspiring English sources

All gene models were manually refined based on the AA-BB-BBCC-CC multiple alignment framework.

It may be possible to overcome this problem in a multiple sequence alignment framework using a divide-and-conquer approach by selecting subsets of taxa for which overlapping microinversions are less likely to be present.

Finally, although JABAWS MSA is focused on multiple alignment, the JABAWS framework is flexible, and will soon be extended to include analytical methods such as secondary structure and disorder prediction.

In the interim, we propose the following framework as a starting point: Multiple alignment programs such as ClustalW [ 22], MUSCLE [ 23] and T-COFFEE [ 24] provide accessible tools to align multiple species.

From the start, the T-Coffee framework made it possible to turn any pair-wise method into a multiple alignment method, thus opening the way to two major developments undergone by multiple aligners these last years: meta alignment methods and template-based alignments.

By recasting the problem of redundancy in multiple structural alignments into this framework, in which the matrix A now describes the multiple alignment, we adapted the QR factorization to produce a minimal basis set of protein structures which best spans the evolutionary (phase) space.

In addition, we design a stochastic parallel framework that significantly speeds up the simultaneous refinement of multiple alignment candidates.

An algorithm for progressive multiple alignment of sequences with insertions.

(c) Multiple alignment of the NREP ORF across vertebrates.

Multiple alignment analysis was performed using Multalin (http://multalin.toulouse.inra.fr/).inra.fr/

It then constructs a multiple alignment that is maximally consistent with the improved pairwise alignments.