Sentence examples for multiple alignment editor from inspiring English sources

MSAs were constructed using the multiple alignment editor Jalview [70].

The sequences were analyzed using the Jalview multiple alignment editor [41].

Pairwise identity percentages were calculated with JalView Multiple Alignment Editor from ClustalW.

Sequences were collapsed into haplotypes by manually removing INDELS using the multiple alignment editor program Jalview.

Sequences with extensive gaps were manually excluded from phylogenetic analysis using the multiple alignment editor Jalview version 2.7 [ 62].

Multiple alignments were carried out using ClustalW at default parameters [ 58] and the Jalview multiple alignment editor [ 59] from the EBI website http://www.ebi.ac.uk/.ac.uk/

All sequences were aligned by using the multiple sequence alignment editor ALIGN-IR (LI-COR), and consensus sequences for every gene sequenced were determined.

The aligned PabHLH motifs were highlighted in GeneDoc Multiple Sequence Alignment Editor and Shading Utility (Version 2.6.02) [ 43] and then copied to rich text file (RTF) for further annotation.

Multiple alignments of individual RPs or mega-sequences of SSU, LSU and all RPs were obtained using a multiple sequence alignment editor BioEdit version 7 [ 69].

The resulting protein alignment was reviewed and finalized using the multiple alignment sequence editor MASE.

The rbcL nucleotide and protein sequences were prealigned with clustalw and refined by eye using the multiple alignment sequence editor SeaView [ 41].