Sentence examples for multiple alignment construction from inspiring English sources

Finally, we propose new directions for the future development of multiple alignment construction and analysis methods.

The Multiple Alignment Construction and Analysis Workbench (MACAW) program [64] was used to identify common patterns in the 3'UTRs of the putative targets.

The details of multiple alignment construction are described below.

However, the 8 CM C-terminal domains are conserved enough to allow multiple alignment construction and phylogenetic analyses.

These overlaps and multiple alignment algorithms use a combination of nucleotide-space (i.e., the bases of the reads) and flow-space (i.e., the 454 flowgram signal intensities of the reads), where available, to perform the multiple alignment construction.

Typically, molecular phylogenetic tree construction starts from a set of sequences (DNA or proteins), computation of a multiple sequence alignment, and then, based on the multiple sequence alignment, construction of a tree using one or several optimization criteria, such as distance, maximum parsimony, minimum evolution, maximum likelihood, and Bayesian inference.

Some common computational programs for multiple sequence alignment construction are MUSCLE, 4 DIALIGN 2, 5 T-Coffee, 6 CLUSTAL W, 7 and Kalign.

An iterative approach to multiple sequence alignment construction and trimming was performed, based in large part on the use of hidden Markov models to construct accurate alignments with detailed confidence scores.

Multiple alignment was constructed with CLUSTALW [26].

The remaining sections of the alignments were concatenated into one multiple alignment and used in the construction of a phylogenetic tree with PHYLIP software [ 36].

In any application that performs a comparison between multiple sequences, either by multiple alignment or just by the construction of phylogenetic trees, we perform the similarity calculation in many independent sequences.