Sentence examples for multiple alignment and from inspiring English sources

Fifty-eight nucleotide sequences from analyzed RABV isolates were aligned using Clustal W multiple alignment and visualized with the BioEdit software v. 7.0.5.3.

Match weight seed parameter is essential in the multiple alignment and depends on the number of genomes to align and their lengths.

We aligned the partial HA sequence to 35 representative GenBank entries (ClustalW multiple alignment) and calculated a neighbor-joining phylogenetic tree based on this alignment.

We tested multiple alignment and variant calling algorithms and validated ∼200,000 putative SNVs by sequencing them to depths of ∼1,000x.

Prediction tools such as PolyPhen [13] and SIFT [14] are primarily based on multiple alignment and amino acid substitution penalties.

We characterize these differences and deconstruct their two primary sources: multiple alignment and the clustering method used.

Therefore, by varying the thresholds of RMSD and the cardinality of the ensemble, multiple sieved models are generated for a given multiple alignment and superposition from MUSTANG.

Fast clustering tools such as ESPRIT do not make use of a multiple alignment and rely on k-mer heuristics to calculate pairwise distances between ungapped sequences.

Most likely this is done in order to obtain speed or because automation of multiple alignment and phylogeny was deemed unfeasible.

In total, multiple alignment and identification of orthologs provided support for the existence of seven polycistronic clusters which concern 38% (15/39) of the Hox genes (table 1).

The multiple alignment and extension steps are repeated until a final non-extendable set is obtained or upon completion of a predefined number of iterations.