Sentence examples for multiple alignment algorithms from inspiring English sources
In the absence of a genome sequence, long reads (such as those produced by Sanger or Roche 454 sequencing) from different genotypes can be clustered and aligned via multiple alignment algorithms [ 26].
Using Clustal W multiple alignment algorithms all sequences were aligned with the original donor sequence.
miRNAs are relatively short (~21 nt) which means that in many cases they can be aligned quite accurately using multiple alignment algorithms such as ClustalW [ 25] and MUSCLE [ 31].
The multiple alignment algorithms implemented in the following software were used to align the amino acid sequences: M-Coffee [15], T-coffee [4], and Muscle [16].
Sequence alignments, hidden Markov models, multiple alignment algorithms and heuristics such as Gibbs sampling, and the probabilistic interpretation of alignments will be covered.
Nevertheless, for the DLX case, the proposed DLX evolutionary is not recovered even when multiple alignment algorithms are used.
The MEGA 5 ClustalW multiple alignment algorithm was used to align all 102 sequences [ 36].
The PCR products were sequenced and aligned by using the multiple alignment algorithm in the MegAlign package (DNASTAR) and the MEGA program.
In the case of multiple sequences for one gene, sequences were aligned using our own multiple alignment algorithm, which was aimed at rediscovering identical exons in multiple sequences by only matching identical amino acids and optimizing the alignment for long contiguous matched subsequences.
In order to estimate redundancy at the sequence level, we aligned the DArT sequences with a multiple alignment algorithm CLUSTALW [ 78] implemented in Geneious software [ 79], with the default option for analysis of gaps.
Complete genome or S1 gene sequences of IBV were obtained from GenBank, and these IBV sequences and the complete coding sequence of the IBV YN isolate were aligned and analyzed by using the ClustalW multiple alignment algorithm in the MegAlign program of the DNASTAR software suite (version 3.1; DNAstar, Madison, WI, USA).
