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A mask table was created to further eliminate false-positive events that pass these filters defined from recurrent events in normal tissues or through BLAST-like alignment tool mapping of multiple aligning regions.
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In alignment-based mode, the same motif can occur at multiple aligned positions within a single family; in that case only the highest BLS value is used.
All multiple sequence alignments were carried out using MAFFT [ 85] and visualized using Multiple align show (http://www.bioinformatics.org/sms/multi_align.html).html
Using the protein sequences for the AP2, HSF, SEN1 and non-symbiotic hemoglobin encoding genes in rice and Arabidopsis, multiple sequence alignments were carried out using MAFFT [ 77] and visualized using Multiple align show http://www.bioinformatics.org/sms/multi_align.html.html
Supplementary Figure 5 Multiple aligned pre-and postsynaptic modules represent discrete synaptic profiles within individual spines.
Amino acid sequences were multiple aligned through CLUSTAL-W software and compared for conserved sequence motifs.
The 16S rRNA sequences of isolates were multiple aligned using the ClustalW algorithm.
Moreover, fabricating a device with multiple aligned NWs using the aforementioned method is quite difficult.
a The nucleotide sequences of plastid trnM (cau) gene from nine species of seed plants were multiple aligned by using LaserGene (DNAstar, USA).
They were multiple aligned using ClustalW [52] in Mega 3.1 Alignment Explorer with default parameters.
Finally, multiple aligned sequences were clustered using the same parameters as used in the initial pairwise clustering, resulting in the final UPGMA tree.
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