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In alignment-based mode, the same motif can occur at multiple aligned positions within a single family; in that case only the highest BLS value is used.
Amino acid sequences were multiple aligned through CLUSTAL-W software and compared for conserved sequence motifs.
The 16S rRNA sequences of isolates were multiple aligned using the ClustalW algorithm.
Moreover, fabricating a device with multiple aligned NWs using the aforementioned method is quite difficult.
a The nucleotide sequences of plastid trnM (cau) gene from nine species of seed plants were multiple aligned by using LaserGene (DNAstar, USA).
The upstream and downstream 10 nucleotide from the indicated edits (C to U conversion) in protein-coding transcripts of moth orchid and the corresponding regions from other eight species of seed plants were multiple aligned by using LaserGene (DNAstar, USA). a petL-56; b rps12-221; ccsA-33636; d psbN-29 and -30; e petG-56; f rps3-583.
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All multiple sequence alignments were carried out using MAFFT [ 85] and visualized using Multiple align show (http://www.bioinformatics.org/sms/multi_align.html).html
Using the protein sequences for the AP2, HSF, SEN1 and non-symbiotic hemoglobin encoding genes in rice and Arabidopsis, multiple sequence alignments were carried out using MAFFT [ 77] and visualized using Multiple align show http://www.bioinformatics.org/sms/multi_align.html.html
The BioEdit and Clustal W programs were used to multiple align individual sequences with the reference sequence (GenBank accession number: NT008583 or March, 2006 assembly hg18: chg18:71599909-71602173).
Innovative methods to fabricate porous, biodegradable conduits were developed to produce nerve guides with multiple longitudinally aligned channels.
In this study we use a multiple structure aligned PDZ database [33] consisting of 240 PDZ proteins.
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