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Our results, obtained using the Markov chain based genomic signatures, differ from the taxonomic assessments based on singular marker genes from multi locus sequencing [ 22].
Seven (29 %) species displayed four distinct Wolbachia strains based on characterisation of full multi locus sequencing (MLST) profiles; the strains occurred as single and double infections in a small number of individuals (2 17 %).
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During the last years the repertoire of subtyping methods for S. agalactiae have been expanded by DNA sequence based methods like multi locus sequence typing (MLST) [6].
Using multi locus sequence typing (MLST), Curran et al. confirmed in 2004 that P. aeruginosa exhibits a nonclonal epidemic population structure [14].
S. aureus recovered from skin infections and from nasal and throat swabs were analyzed by pulse-field gel electrophoresis, multi locus sequence typing, PCR and microarray.
Molecular typing with multi locus sequence analysis will help clarify this relationship.
Among these, multi locus sequence typing (MLST) has been among the most promising methods [ 31, 32].
Abbreviations: MRSA, methicillin resistant Staphylococcus aureus, MLST, multi locus sequence type; PFGE, Pulsed field gel electrophoresis.
Phylogenetic analyses of multi locus sequence typing (MLST) data grouped the 24 EHEC 2 strains (Table 1) into four STs.
MRSA associated with livestock, of multi locus sequence type (MLST) ST398, has emerged in Europe [ 15- 19].
To assess the genetic relatedness between different SA isolates within our cohort, multi locus sequence typing (MLST) was performed.
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