Pairwise FST for the multi-locus dataset are reported in Table 2. Overall the nuclear dataset measured lower levels of population structure compared to mtDNA.
In the multi-locus dataset including the CR (Fig. 3B), G. i. tenuirostris and G. coprotheres are posited as sisters with only weak statistical support.
We addressed these issues using a molecular phylogenetic approach, including Bayesian age estimation and various ancestral area analyses, on a multi-locus dataset.
Using the multi-locus dataset we found little population subdivision across the central Pacific and no structure in the western Indian Ocean.
Possibly, an increased taxon sampling with a multi-locus dataset would render more precise age estimates and remove this remaining uncertainty.
These matrices can be a partitioned multi-locus dataset, as in the Asterales example, or a single-locus analysis of tens of thousands of terminals, as in the green plants.
The multi-locus dataset was partitioned by gene using the following substitution models: COII GTR+G+I, histone HKY+I, 18 S GTR+I, and 28 S GTR+I.
We first investigated the global pattern of C. briggsae diversity with a multi-locus dataset of 189 isolates, including 57 new isolates derived primarily from tropical sites (Additional files 3 and 4).
Genotypes for each individual at the GnRH and S7 introns were compiled and used to calculate FST for the multi-locus dataset and for pairwise comparisons between locations in ARLEQUIN.
The sister-group relationship of Polyporales and Russulales was supported by a bootstrap support of 98% in the phylogenomic analysis and is in contrast to the result from a multi-locus dataset [ 46], which discussed the order Russulales as a sister group to the Agaricomycetidae.
The analyses presented in this study, based on a multi-locus dataset that derives from a complete sampling of the 12 species of the genus Stenodactylus, reveal the existence of three clades with deep divergences within Stenodactylus and high intraspecific variability in some species, while the estimation of divergence times allows for biogeographical interpretations.
