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Finally, in a performance comparison of MIDAS to a recent subpath prediction method, PATHOME, our method identified more subpaths and much more genes that are well supported by the literature information.
Moreover, much more genes can also be regulated indirectly by miRNAs.
Gene distribution in plant pathogens is quite diverse and much more genes are enriched in species belonging to Pezizomycotina.
Furthermore, much more genes should be detected with expression signaling if more developmental stages and more abiotic or biotic stresses were investigated for gene expression analyses.
Interestingly, much more genes encoded in the T. cruzi genome are translated in the epimastigote (approx. 74%) than in the metacyclic trypomastigote (approx. 58%) stage.
Genome of A. longa SW024T was further compared with the genomes of two other Aquimarina species which were also isolated from the SPG and A. longa SW024T appeared to have much more genes related to replication, recombination and repair.
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Not only in vitro culture but in vivo results, the specific genes of COMP, aggrecan, collagen type II, and SOX9 showed much more gene expressions such as 20, 15, 10, 8 times.
But in the brain, the team detected much more gene expression in humans than in chimps, whereas gene expression in the brains of chimps and the other primates was about the same.
The results clearly indicated that to each pairs of corresponding gene families (paralog) in both genomes, WP3 usually has much more gene number in these families than MR-1has: WP3 contains 225 paralogous families which have more gene members (432 more genes) than their ortholog families in MR-1, while only 102 families of larger gene content (165 more genes) are present in MR-1.
The D. salina plastid genome is much more gene rich than its mitochondrial counterpart, with 102 genes -- five of which are duplicates found in the inverted repeats.
There is a small initial innate response at 2 dpi, with much more gene expression seen at 3 and 4 dpi.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com