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Protein-coding genes were partitioned by codon position in the mt and nuclear nucleotide data sets, or by gene in the mt and nuclear amino acid data sets.
A third data set was constructed combining the mt and nuclear data sets.
Moreover, our analyses indicate that the phylogenetic performance of mt and nuclear data improves when both are combined.
Our results are consistent with different gene trees underlying the phylogenetic conflict between mt and nuclear data.
For each NumtS Additional file 1 also lists the mt and chromosomal fragment lengths, besides the mt and nuclear coordinates.
There is currently no support for paralogy underlying incongruence between mt and nuclear genes with these data.
Similar(6)
Prior investigation has been concentrated on the application of different mitochondrial (mt) sequence and nuclear protein-coding data, herein we employ 17 nuclear non-coding loci (>15 kb), in conjunction with mt complete genome data (>16 kb), to clarify these enigmatic problems.
The newly determined mt (JF703228-34) anuclearear (JF703235-51) sequences are available at NCBI (http://www.ncbi.nlm.nih.gov/genbank/).nih.gov/genbank/
The newly determined mt (AB777216– and77219) anucleareAB777220 AB7772337233) sequences were deposited in the DDBJ/EMBL/NCBI DNA databases.
Similar observations have been made in polar bears, which have lower levels of nucleotide diversity for mt DNA and nuclear DNA than brown bears [ 11, 34].
These two domains of grk transcript localization largely overlap throughout oogenesis in wild-type oocytes, except during stage 7 when MT reorganization and nuclear migration take place.
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