Annotated genomic regions for the human, mouse, zebrafish, fly and nematode DANGER sequences were collected from the NCBI and Ensembl databases.
Studies in classic genetic model organisms including the mouse, zebrafish, fly, worm and yeast have led to major advances in biology.
Genome-wide lncRNA analyses have been performed in human, Plasmodium falciparum, mouse, zebrafish, fruit fly, worm, and yeast [ 34– 34].
Here we report a comparative analysis of overlaps between genes coding for well-annotated proteins in five metazoan genomes (human, mouse, zebrafish, fruit fly and worm).
Here, we examined the distribution of the type-I (x-x-S/T-x-I/L/V) or type-II (x-x-V-x-I/V) PDZ-binding motifs in proteins encoded in the genomes of five different species (human, mouse, zebrafish, fruit fly and nematode).
Gemma currently focuses on a set of selected species: human, mouse, rat, zebrafish, fly, worm, and yeast.
It is straightforward within the motifbreakR package to specify any of the research model organism genomes in BSgenome (currently 22 in number), including mouse, zebrafish, and fruit fly.
DRIL1 is evolutionary conserved, with specific orthologs in the fly, mouse, zebrafish and C. elegans genomes [2].
This set comprises all JmjC-, Pfam-JmjC, Blast-JmjC-, Pfam-2OG-FeII-OxyII-Oxy- and Pfam-PhyH-domain containing sequences from human, mouse, zebrafish, pufferfish, nematode, fruit fly, and yeast.
Furthermore, genetic analyses using model animals including mice, zebrafish, fruit flies, and nematodes have led to new findings on different phenotypes [ 4, 8, 9, 12, 13].
Mutations in genes encoding key regulators of transcriptional pausing have been recovered from several genetic screens for specific phenotypes or interactions with specific factors in mice, zebrafish and flies.
