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We identified 79 human/mouse homolog uORF pairs where both human and mouse sequences matched entries in the EST database with an aligned start codon.
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Both cDNA sequences matched the mouse genomic DNA sequence.
Most of these sequences matched the 3′ end of wild-type mouse RNA transcripts but were truncated at the 5′ end.
(B ) Same as (A ), but for the sequences matched with a template during a track session (Track ) and an open box session (Open ) of a Tau mouse.
About 200 sequences matched Deltaproteobacteria (Fig. 2).
All other junction sequences matched perfectly with the reference sequence.
The mouse Tfam promoter was sequenced, matched to the GenBank sequence (Accession number AC153509) and used for PCR primer design (Table 1) to produce promoter truncations of 2051, 1706, 978, 393 and 78 bp from the transcription start site.
Five retroposed sequences matching Pkm2 in mice contain N-terminal extensions.
These results indicate that several retroposed sequences matching glycolytic enzymes in both the human and mouse genomes have ORFs, supporting possible expression of these sequences.
We identified a total of 94 retroposed sequences matching glycolytic enzymes in the human genome and 291 in the mouse genome.
In addition, 13 putative MuERVs (marked with "b") harbored U3 sequences matching 100%% to their respective U3 sequences isolated from no burn mice.
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