Sentence examples for mouse promoter sequences from inspiring English sources

Rat promoter sequences were obtained by blatting the 2.5-kb mouse promoter sequences into the UCSC genome browser of rat.

Briefly, we prepared human and mouse promoter sequences encompassing the 500 bp upstream and 100 bp downstream of the transcription start sites.

Human and mouse promoter sequences (−2000∼ +500 bp of the annotated transcription start sites) were downloaded from Table Browser of the UCSC genome browser [70].

To account for the effect of the uneven distribution of "GC" and "AT" content, we used six different background models that were constructed based on clusters of nucleotide compositional vectors of the whole mouse promoter sequences available from Ensembl [67].

Fig. 1B shows a plot of the difference in GC content between pairs of motifs versus FR for the genomic set of mouse promoter sequences.

First, we carried out a comprehensive comparison of human and mouse promoter sequences, to examine the relationship between promoter conservation and gene function.

For each PWM, we scored every human and mouse promoter sequence based on maximum log odds scores, and obtained the average of human and mouse homolog promoter scores as the PWM score for each gene.

The three compositionally different regions were defined in the complete mouse promoter sequence dataset.

Likewise, to identify whether the similar sort of RUNX3 motifs exist in the mouse L1 promoters, we initially searched for RUNX3 or RUNX3-related sequences by scanning against the entire mouse L1 promoter sequences.

We analyzed 6,372 non-redundant mouse gene promoter sequences with the previously developed program PEAKS [ 14, 15].

For alignment of human and mouse rp promoter sequences I used mVISTA [ 57], which is based on the AVID global alignment program [ 58].