Sentence examples for mouse motif databases from inspiring English sources

MOST+ also output hundreds of novel motif candidates, which were not found in mouse motif databases.

Results showed that 117 motifs discovered by MOST+ (16% of total found motifs) could be aligned with one or more motifs in our mouse motif databases (JASPAR, UNIPROBE and Chen et al., 541 in total, Figure S6).

Columns 3-5: 3) Times: running time under each word width K; 4) Motifs predicted: number of unique motifs found by each schema; and 5) E-value: the lowest e-value of alignments between a major motif found by each schema and motifs in mouse motif database.

For mESC date set, we included 146 motifs from JASPAR, 386 from UNIPROBE and 13 by Chen et al., 541 motifs in total, to form our mouse motifs database.

To search for the potential binding protein to the predicted motif, we compared the motif position weight matrices (PWMs) to all known human and mouse motifs in the database.

From the 200 motifs in each set (Additional file 1: Tables S10 to S13), ten highest scored enriched DME motifs (Additional file 2: Figure S8C) were analyzed further for matches to known binding sites for mammalian transcription factors in the motif databases, JASPAR Vertebrates, and UniPROBE Mouse via motif comparison tool, TOMTOM [ 56- 58].

We retrieved curated PWMs from two leading open-access TFBS motif databases: JASPAR CORE 2009 and UniPROBE Mouse [ 48, 49].

Therefore, it is foreseeable that more motif databases will be created.

Motif matching to known motif databases was performed using TOMTOM 4.9.1 (Bailey et al., 2006) and 'All vertebrates' database.

Motif databases very often contain multiple motifs for the same TF, or very similar motifs for different TFs.

We selected JASPAR Core Insects, DMMPMM and iDMMPMM motif databases for comparison of discovered motifs with known binding motifs.