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Three publicly available mouse microarray datasets were included in this study, corresponding to 51 arrays.
Four mouse microarray datasets totaling 141 arrays were obtained from ArrayExpress for further analysis (Table 1).
We have created an online tool, called GeneFriends, which identifies co-expressed genes in over 1,000 mouse microarray datasets.
Underlying GeneFriends is a genome-wide co-expression map created using over 1,000 mouse microarray datasets.
For example, a gene considered SP must also satisfy the MS condition, but we labeled it as SP. We considered five datasets (including the four mouse microarray datasets and the UniGene EST dataset) as five voters.
Our study is based on the Affymetrix ATH1 Genome Array platform here, but our approach can be transferred to any platform, organisms and experimental design which allows one to compute a logarithmic fold change, e.g. human or mouse microarray datasets.
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Of the 147 lung-specific genes in our dataset, 102 were found in the mouse microarray dataset (totally 31,770 genes).
The model again showed a substantial capacity to distinguish between MI and control samples (tested on independent mice microarray dataset, AUC = 0.86, P < 0.0065 vs. random model, Figure 5).
The human and mouse OPMD microarray datasets are publicly available at GEO repository under the accession numbers GSE26605 and GSE26604, respectively and have been previously published [ 14, 15].
We studied the relationship between host and target genes in three different mouse developmental microarray datasets (see methods): embryonic stem cell development (SCD) [ 27], somitogenesis (SG) [ 28] and neurite outgrowth (NO) [ 29].
We then examined the relationship between H4K5ac and gene transcription using a publicly available whole mouse genome microarray dataset (Agilent) for gene expression immediately after CFC in the mouse hippocampus [ 4].
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mouse microarray experiments
mouse cancer datasets
mouse array datasets
mouse membrome datasets
mouse transcript datasets
mouse erythrocyte datasets
mouse microarray samples
mouse promoter datasets
mouse microarray chips
mouse microarray studies
mouse phenotype datasets
mouse expression datasets
mouse tractography datasets
mouse benchmark datasets
mouse microarray data
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