Sentence examples for mouse miRNA dataset from inspiring English sources

To search for any sequences homologous to mammalian miRNAs within the leishmania exosomal RNA libraries, we ran blastn from the BLAST Plus package [ 79] version 2.2.29+ querying the top thousand most abundant cReads on each library against the whole human and mouse miRNA dataset (hairpin and mature) available at miRBase (mirbase.org).org

To systematically identify miRNAs that can modulate the iPSC production, Judson et al. screened 570 chemically-synthesized mature mouse miRNA mimics for their ability to promote OSK-induced reprogramming of mouse embryonic fibroblasts (MEFs) (Judson et al., 2013).

We compared our miRNA dataset with theirs and found that there were 52 miRNAs in common.

Normalization of the miRNA dataset was performed using the 11 most rank-preserving miRNAs across all 40 samples (Figure S1).

The cyanine-3-labeled miRNAs were hybridized on Agilent Mouse miRNA Microarrays 8 × 15K V2 (G4472B) containing 627 mouse miRNAs and 39 mouse viral miRNAs.

The conserved miRNA dataset include all miRNAs conserved in Arabidopsis Oryza and Populus or conserved between Arabidopsis and Populus suggesting that the dataset identified here is complete.

Thus far, >2500 human miRNAs (hsa-mir) and 1900 mouse miRNAs (mmu-mir) have been identified and described at the miRBase website (http://www.mirbase.org, released in Nov. 2013).

For comparison, 2,000 independent permutations were performed by randomly choosing 12 miRNAs from the cultivars and wild rice miRNA datasets, respectively.

At the design time of the microarray, there were 576 human miRNAs, 238 rat miRNAs and 358 mouse miRNAs reported.

The conservation of mouse miRNAs was estimated using phastCons conservation scores [24] for whole miRNA precursors.

The 381 probes represent 281 known human miRNAs, 49 mouse miRNAs, 14 rat miRNAs, 33 predicted human miRNAs and 4 control probes (Ambion).