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Sample SRR453174 (mouse heart RNA-seq) consisted of 82,886,668 x76bp reads as paired-ends.
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Heart RNA-seq datasets used combined data from accession numbers ERR023145 and ERR023145.
Mouse ES cell (129 strains) RNA, mouse heart total RNA (Clontech) and mouse skeletal muscle/total RNA (UNITECH. Co., Ltd).
Stranded RNA-seq libraries were then prepared using the Ovation Mouse FFPE RNA-Seq Multiplex System (NuGEN) and sequenced on an Illumina HiSeq 2000.
We first derived simulation parameters from the mouse liver RNA-Seq data described in Mortazavi et al. (2008).
In order to identify tissue-enriched novel transcripts and exons in mice, the RNA-seq datasets for six tissues (i.e., GSE30352 for brain, cerebrum, heart, kidney, liver and testes) [ 11] were analyzed using the pipeline 'Tophat-Cufflinks-Cuffcompare' [ 12, 13].
The mouse RNA-seq data has been published in [ 21].
*two bovine microarray [ 9, 11], one human and one mouse RNA-seq datasets [ 19] were used.
The mouse RNA-seq data (GSE52564) were originally mapped to mm9 by TopHat.
A mouse RNA-seq dataset were obtained from Gene Expression Omnibus (GSE61875) [ 10].
We have applied a real mouse RNA-seq dataset to different algorithms to test the performance of XBSeq [ 10].
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