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On the analysis of nine bacterial artificial chromosome (BAC) clones, we have uncovered four more Tdpoz1 homologs in the mouse genome, designated Tdpoz2 through Tdpoz5.
In addition, there are two Ifi202 genes and a pseudogene in the 129 mouse genome, designated Ifi202a b and c[ 20, 60], but only one Ifi202 gene in C57BL/6, which has a number of minor sequence variations from the published Ifi202a and b[ 60].
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This phage is always inserted into small repeats of the meningococcal genome, designated dRS3.
RBP50 has two orthologs in the potato genome, designated StPTB1 and StPTB6.
The program accesses our local mouse genome database in order to extract the sequence designated as a template, and to mask all sequence variations and repeats based on the NCBI mouse genome build release 37.
Moreover, the Glutamate family in mammals contain the large family of pheromone receptors designated vomeronasal receptors type 2 (V2Rs) which in the mouse genome contains over 50 functional genes while all V2Rs in the human genome are pseudogenes [ 19].
In the report that follows, we distinguished the Abpa paralogues obtained from the mouse genome from those we derived from wild-derived rodent taxa by designating them "B6" (an abbreviation of C57BL/6, the source strain for the mouse genome project).
To clearly distinguish mouse genome Abp paralogues predicted here from those previously reported [ 8] and from those derived from other species/subspecies, we designate our current paralogues with the prefix B6, in reference to the C57BL/6J strain whose genome has been sequenced.
Specifically, we noted that a certain DNA sequence designated H4.141 (5'-AGGCTGaAGTGCA-3') was > 100-fold overrepresented compared to other HNF4α binding sites in the human, but not the mouse, genome (see additional file 1: Figure S1).
Mouse Genome Sequencing Consortium.
Biologists believe the mouse genome will be essential to interpreting the human genome.
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