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The mouse genome also encodes one Apobec3 gene on chromosome 15.
In addition, the mouse genome also contains 3 L1 elements of the oldest F subfamily (with highly truncated 5'-UTR promoters) and 34 unclassified L1 elements.
The mouse genome also encodes β-defensin genes in four syntenic gene clusters 10 with some genes having clear human orthologues whereas others are rodent specific 11.
The mouse genome also contains a significantly higher proportion of co-opted genes in bidirectional pairs (12 of 45, 26.7%) when compared with the genome average (χ2 = 17.5, p < 0.0001) (Table 2 and Additional file 2).
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The human and mouse genomes also each contain several IFITM processed pseudogenes.
Exonized TEs that are alternatively spliced are not unique to human as most of the exonized TEs in the mouse genome are also alternatively spliced [3].
The majority (80%) of the reads mapped to the mouse genome were also mapped to the human genome.
Similar to many other species, the miRNAs listed in the mouse genome have also increased over time.
Additional annotations for the Affymetrix mouse 430_2 array based on probe exon mapping, signal intensity and uniqueness on the mouse genome have also been included (7).
For all cDNA sequences categorized by 'Significant Alignments on Mouse Genome', we also registered the exact chromosomal position in kilobases (starting from the top of the short arm).
This web-based database not only provides information on regulatory activities present along the mouse genome but also gives access to a large collection of mice for engineering chromosomal rearrangements in non-genic intervals.
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