Sentence examples for mouse gene lists from inspiring English sources

The human and mouse gene lists were also used to build a synteny plot [ 86– 86].

Tables 6 and S3 are comparisons of the genes that overlap between the human and mouse gene lists (Table S1 and Table S2) showing mouse gene symbols and their human orthologs.

All of MVA, FWPV, CNPV and LSDV also significantly up-regulated caspase 4 (casp 4) (historically called caspase 11 in the mouse) (gene lists reference) which is required for the maturation of the pro-proteins of IL-1b and IL-18 (proIL-1b, proIL-18) and plays an important role in the activation of caspase-1 in inflammasome complexes, and therefore inflammation [ 65].

MESHER did not find a significant association between "Hypoxia", "HIF", and "Hypoxia p53" and the AKT mouse gene list and there was very poor comparison between MESHER and Literature Lab despite each method using MeSH terms (see Additional File 9).

Mouse gene list of high expression levels (top 20%, gene set 1) and that of low expression levels (bottom 20%, gene set 2) were selected according to RNAseq data from the mouse brain (Mortazavi et al., 2008) (Supplementary Dataset 2), and were fed to MamPhEA to find differential enrichment of the customized phenotype 'essentiality'essentiality

To begin to further analyze these classes of significant genes in a systematic way we determined the intersection of these genes with the human and mouse genes listed in the GenAge database [28].

KEGG pathway analysis using ConsensusPathDB-mouse was done to identify signaling and metabolic pathways that were over-represented in the mouse DE gene lists.

For our study, we downloaded the most recent GO files and mouse gene annotation lists from the GO website (January, 2009).

Primers used for amplifying 3'-UTR of each mouse gene were listed in Table S5.

No pair of mouse-human gene lists regulated by a common ceQTL had an overlap in their enriched GO categories.

Gene synonymies used in the literature searches of the candidate mouse genes are listed in Table 3. Putative Drosophila homologs of the mouse genes from the candidate gene list were identified using FlyBase [http://flybase.org/] [93], the Mouse Genome Database (MGD) [URL: http://www.informatics.jax.org; January, 2009] [108], and TreeFam [http://www.treefam.org/] [95], [96].