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For TFBS consensus motifs of variable length, separate matrices were constructed for each motif length.
Known motifs of variable structure were recovered for p53, Stat5a and Stat5b.
However, it does provide more interpretable models of motifs of variable structure that are suitable for follow-up structural studies.
Possible sequence motifs of variable lengths have been extracted out of predicted 'TM' regions, by using a naive text extracting algorithm.
GLAM2 and RISOTTO were selected because they appeared to be the best candidate competitors for the task of finding motifs of variable structure.
When evaluated against other methods to search for motifs of variable structure, our method discovered previously known or interesting motifs in all the data sets we used.
Similar(51)
A one-sided electrode with a honeycomb motif of variable porosity is used to tailor the effective piezoelectric properties of the film.
Several theoretical works have evidenced the fundamental role exerted by structural motifs on the emergence of variable functional motifs, on different time and spatial scales [30], [42], [43].
TOY contains the MD-2 binding ectodomain of TLR4, the LRR motif of hagfish variable lymphocyte receptor (VLR), and the Fc domain of IgG1 to make it soluble, productive, and functional.
For the pure IFF motif, the dynamics of variable u results from a production term proportional to the stimulus x and a first-order decay term.
More sophisticated algorithms are also able to handle motifs interrupted by gaps of variable lengths [ 24– 26].
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