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Interestingly, SLK and CHK2 also contain short helices C-terminal to the DFG motif, while in DAPK3 helix αAL is distorted and reduced to half a turn.
Our analysis confirms that all the pilins encoded by the class I pilE contain this motif, while in the class II pilins this motif is either EYYSN (allele 15, present in 20 isolates) or EYYSD (present in all remaining isolates).
In OsC3H10 and OsC3H37 proteins, the first zinc finger is replaced by a C-X10-C-X5-C-X3-H C-X10-C-X5-C-X3-H C-X10-C-X5-C-X3-H C-X10-C-X5-C-X3-H C-X10-C-X5-C-X3-H C-X10-C-X5-C-X3-H C-X10-C-X5-C-X3-H
On the other hand Shirasawa et al. [ 40] showed that among tomato genomic SSRs, AAT is the most abundant trinucleotide and AT the most abundant dinucleotide motif, while in wheat, AAC is the predominant trinucleotide SSR motif [ 41].
Notably, both the backbone and side-chain of N736 in PfLAMMER are involved in hydrogen bonding to the backbone of the catalytically important HTD motif, while in other CMGC kinases, the coupling between the P+1 pocket and catalytic site is largely mediated through backbone hydrogen bonds.
Similar(55)
Only two predicted proteins are endowed with all four chitinase signature motifs, while in five sequences no such motif was detected.
Clade-A AHLs contain only one copy of the Type-I AT-hook motifs; while, in Clade-B, some of the AHLs contain only one copy of the Type-II AT-hook motifs and the rest contain both types of AT-hook motifs.
This is due to the conservation of individual positions within each motif: while the conservation of positions in each synthetic motif is uniform and independent, this pattern of conservation is not mirrored in real TFBS motifs.
For instance, four members of the clade C shared one leading motif, while another leading motif was present in six members of the clade G and six NACs from other clades.
The DAB homology (DH) domain binds to transmembrane cargo proteins containing the NPxY motif while the NPF sequence repeats assist in clathrin assembly.
The imperfect motifs, while included in their own separate bin in this study and reported for comparison purposes, were not statistically analyzed in comparison with other SSR motifs because they are more complex in composition and contain greater size ranges.
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