Sentence examples for motif we compared from inspiring English sources

To confirm the involvement of Dysbindin in the altered MARCKS transcription levels via the CCAAT-2 motif, we compared the luciferase activity of UTR(1152 -Luc 1152 -Lucin detectedn knockdown cells winh that of control cells.

For each motif, we compared the occupancy score of each TF between consensus promoters with the motif vs. those without it Figure 6, (Additional file 1: Figure S7).

To ask whether motif enrichment within a cluster indicates that these genes are regulated by a common factor (i.e., the transcription factor that binds the motif), we compared selected clusters to published datasets of verified target genes.

To evaluate the effect of charge neutralization of the di-arginine motif, we compared the capacity of Cdc42 G12V with the di-arginine motif mutated to di-glutamines (Cdc42 G12V/QQ) to substitute for Cdc42 G12V in our Ca2+ experiments.

To see if introns were commonly conserved at a level equivalent to that represented by the ycf68 motif, we compared the intron in trnI-GAU with a sample of other introns within the inverted repeat (trnA-UGC and ndhB), and in the large single copy region (trnG-UCC, trnL-UAA, and trnV-UAC).

Using the seven position weight matrices (f ap ) trained on the characterized binding sites (all from S. cerevisiae,) and scaling the proportionality by the total number of changes observed in the motif, we compared the predicted rates to the observed rates and the results are shown in figure 4.

To obtain the positional distribution of the GATA-3 motif we compare the observed occurrence frequency of the GATA-3 motif with its background or expected frequency along the promoter sequences.

In order to demonstrate that the presence of a palindrome is a key feature of dif motifs, we compared each dif sequence with a randomly generated 28-mer obtained by shuffling the nucleotide of the original dif.

To identify the Xenopus-specific motifs, we compared the Xenopus NRSEs to the human and mouse motifs.

To evaluate the overrepresented oligomers for potential functional motifs, we compared them to known transcription factor binding sites.

To explore potential functions for G4 motifs, we compared their genomic distribution in S. pombe with known functional genomic regions.