Sentence examples for motif visualization program from inspiring English sources

The motif visualization program MotifViz [ 19] was used to detect the transcription factor binding sites with motif match p-value cutoff 0.01 and with all intergenic sequences of S. pombe and S. japonicus as background sequences for searching with the respective species.

The structures were visualized, compared and manually superimposed in the molecular visualization program, PyMOL.

3D Images of superimposed motifs and averaged coordinates can be viewed using Rasmol (Sayle and Milner-White, 1995), Chime, Jmol or any molecular visualization program that can handle atomic coordinates in PDB format.

In this work, we present 3MATRIX (http://3matrix.stanford.edu) and 3MOTIF (http://3motif.stanford.edu), a web-based sequence motif visualization system that displays sequence motif information in its appropriate three-dimensional (3D) context.

At the time, Mr. Leung said, he was working on a solar system visualization program.

An accessory visualization program is included.

The simulation results are displayed through a pathway visualization program, GlycoVis [14].

Shuffle-LAGAN alignment was visualised with the VISTA visualization program [58].

For visualization and editing of PDB models, molecular graphics visualization program PyMoL was used.

Given a set of genomic regions, it performs (i) ab initio motif discovery, (ii) motif enrichment analysis, (iii) motif visualization, (iv) binding affinity analysis and (v) motif identification.

MEME-ChIP provides several analysis tools such as motif discovery, motif enrichment analysis, motif visualization, binding affinity analysis, and motif identification.