Sentence examples for motif using the from inspiring English sources

We optimized each motif using the program BioOptimizer [60].

All 3'-UTR sequences were checked whether they contain the novel motif using the MAST [29] motif search tool (the full transcript set including MAST results is available in Supplementary Table S2).

1 kb of promoter sequence (upstream of the start ATG) from each gene in Groups 2 5 of the C. elegans ORG dataset (foreground dataset) and their C. briggsae orthologs were searched for the presence of a transcription factor binding motif using the 811 motifs or Positional weight Matrices (PWM) in TRANSFAC 10.2 (www.gene-regulaiton.com).

A dead-kinase AmVKR (AmVKRdk) construct was obtained by site-directed mutagenesis of the active D1031FG1033 motif into a DNA inactive motif using the QuickChange®Site-Directed Mutagenesis Kit (Stratagene) with the 5'-GTGAAGCTTGGAGACaaTGcTATGACGAGGTTG-3' mutated sequence and its reverse complement (mutated residues are in lowercase italic).

Multiple sequence alignment for each of the three motifs of the CC-TPR proteins identified in Arabidopsis (above-described search) and human Hop TPR2a as the reference sequence was used to build a statistical model of the corresponding motif using the software package HMMER 3.0 (http://hmmer.org/).org/

For each of the eight datasets, our approach identifies the optimal motif using the SP scoring measure (Table 4).

Ms. Aldana worked over short motifs, using the full range of her instrument, articulating long and fast lines.

Additionally, our approach allows estimation of the relative abundance of pseudoknot and other (e.g. tree) motifs using the "edge-cut" property of RNA graphs.

We here use k-mer word scores to visualize trends among sets of motifs, as well as to calculate inter-motif distances for clustering motifs using the HOPACH algorithm [53].

An analysis of the consensus family motifs using the PATCH program in the Transfac database indicated that 19 of the 30 consensus motifs contain sequences that correspond to experimentally confirmed binding sites for specific plant TFs (Table 1).

gambiae (AgamP3.4) were scanned for microsatellite motifs using the SciRoKo3.4 software program [33].