Sentence examples for motif prediction algorithm from inspiring English sources

Additionally, the sequences of several snake phospholipase A2 inhibitors were used as the input for a motif prediction algorithm (MEME).

We then searched both strands using a standalone installation of the RED motif prediction algorithm [ 79].

ELM has been used to benchmark several motif prediction algorithms (Davey et al., 2006. 2009, 2010c, 2012b; Edwards et al., 2007; Neduva et al., 2005).

In addition, it may influence the splicing process through the abrogation/creation of enhancer/silencer motifs as prediction algorithms for the presence of such sequences have demonstrated (Table 3).

In this study we have predicted LexA-binding sites and analyzed the putative LexA regulons in 26 cyanobacterial genomes that harbor a lexA gene using a highly efficient motif scanning and regulon prediction algorithm.

We use the set of 100 shuffled motifs as input to the prediction algorithm to scan the yeast intergenic region multiple alignments.

To identify sites for such modifications, we searched for potential regulatory motifs using bioinformatic prediction algorithms (http://scansite.mit.edu, [25]) and identified a putative protein kinase A (PKA) phosphorylation site at S229 within the POUS domain of Oct4 (Figure 2A).

The main issue is however not the lack of motif prediction, but, vice versa, typically motif finding algorithms report as significant motifs that can be considered as false positives.

The Seeder algorithm was used to perform motif prediction in seed-specific promoters using a seed length of six and a motif length of 12, and the 'protein-coding with transcript support' gene promoters as a background.

Comparison of VIPs for a collection of binding motifs to sequences determined experimentally indicates that the prediction algorithm is accurate and applicable to a diverse range of structures.

To check the efficiency, predicted motifs from the data sets of 9 protein families were analyzed and MotViz algorithm was more efficient in comparison to other online motif prediction tools.