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Each identified motif pattern was used to predict genes expressed within one of the four PSs and the entire plant.

We found that the most frequently observed structure in the spatiotemporal network motif pattern was the feed-forward loop structure (Motif 4) (79% for 19 sub-networks).

For a known TF, a publicly available motif pattern is used, e.g. from JASPAR [ 16].

Conversely, for promoters with low (r < 0) co-expression, the odds of having the motif pattern were 178 1429.

As a result, we found that the most frequently observed structure in the spatiotemporal network motif pattern is the feed-forward loop structure.

In the cases of the cnidarian anterior Hox and ParaHox (Gsx) orthologs, the motif pattern is conserved in relation to that of the bilaterian orthologs.

The motif patterns were shown in Fig. S3.

Unlike other regions in the LKs, LRR motif patterns were variable (Fig. S3A).

The LKs in group 4 had fewer LRRs than those in groups 1, 2 and 3, and the motif patterns were less regular like group 2. However, many LKs in this group had motif L3 at the end of LRR domain.

Mining for condition-specific motif patterns is effected with a recursive partitioning strategy.

In contrast to the N-terminal and NBS domain, the LRR motif patterns were variable.