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A skull-and-crossbones motif is positioned over a number one followed by nine zeroes.
The twin-arginine motif is positioned at the boundary between the n- and h-regions.
The consensus motif is positioned at a distance of 16.79 bp (SD = 11.37) from the translation termination codon.
This motif is positioned in the α-helical insert located after the predicted strand-β5 in the five p-MULT families (supplementary fig. S2 A, Supplementary Material online).
In these genes, the start of the GUACAUUA motif is positioned at an average distance of 18.95 bp (SD = 5.12) from the translation termination codon.
One c-kit G-quadruplex motif is positioned between −87 and −109 bp upstream of the transcription start site and was shown to fold into a quadruplex in vitro [13].
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The RFHVMn motif was positioned downstream of the KSHV RKRNRS P" motif at aa 40 46, termed Region II in this study.
In these models, distance constraints were imposed so that the residues of the PR1 RXXPXXP motif were positioned at the right distance with respect to the residues on SH3 with which they interact in our molecular model.
The arginine and tyrosine residues from this motif are positioned close to the ligand seen in the binding pocket of the occluded structure of PepTSo (Newstead et al, 2011).
Although the motif was positioned partially or even fully on paired regions in the other considered cases, a suboptimal structure with small energy difference existed, on which the motif was found nearly or fully on a structure element consisting of unpaired nucleotides.
M-ward bridges of mask motifs are positioned on actin subunits F–I (Fig. 3E, F).
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