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A ripple corrugation elongated in the direction (Low Temperature Ripple-LTR motif) is inferred from the spot profile in Fig. 2a, measured in a nearly out-of-phase condition (S z ≈ 2.1), with a lateral periodicity of the ripple nm.
The optimal motif is inferred as the motif with the maximum multinomial probability of observing the expected distribution.
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This motif was inferred from a group of genes known to be involved in the glyoxylate cycle by Hughes et al. [ 22].
A multiple sequence alignment was carried out using MUSCLE [19] and the conservation patterns of the relevant motifs were inferred from the alignment.
First, the rules determining binding of Zn fingers to DNA motifs are inferred from proteins with 1 3 Zn fingers and may be different for multiple, tandemly arrayed Zn fingers [43].
We would like to emphasize that these network motifs are inferred from interactions tested in 2-component mixtures.
The biological significance of the identified motifs was inferred by their presence in databases such as PLACE [ 34], TRANSFAC [ 35], and AGRIS [ 36].
Rm62, which is an ATP-dependent RNA helicase that contains a DEAD-box domain and an RRM-type RNA-binding motif [41], [42], is inferred to be involved in the regulation of alternative splicing [35] and interacts with components of the RNAi machinery [43].
Most inferred TF-target relations have experimental evidence or other computational evidence, which is inferred by combining ChIP-chip data, phylogenetic conservation, motif discovery, other expression data, and enrichment for genes in the same Gene Ontology.
Duration then is inferred rather than perceived.
Nothing is inferred!
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