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Exact(5)
e Each motif is compared to every section in the label map to generate a pattern matching scores' map.
To account for this, SLiM discovery tools attempt to attach a score that indicates how unlikely a given motif is compared to other motifs in a dataset, either through an explicit heuristic [8] or by an empirical estimate [7].
Considering how short the sequence motif is compared to the whole peak region, this is a significant difference, and contributes to explaining the difference in scores between PWM and BBLS PWM methods.
WeederH produces a χ score assessing how conserved the motif is compared to the rest of the homologous sequences.
The discovered motif is compared with the annotated matrices in RegulonDB, to detect whether they correspond to the annotated one for the TF of the ChIP experiment.
Similar(55)
For each row of the table, the percentage of TF-encoding DEGs associated with a PRE motif was compared with that observed among TF-encoding non-DEGs (Fisher's Exact Test).
The p-values of each motif are compared to all other motifs.
For each TF, the single most enriched motif was compared to the TRANSFAC reported motifs for that TF.
The occurrence of the CTCF motif was compared among the promoter sets and not found to be different (Fig. 6b).
The observed frequency of a motif was compared to that found in the randomized NT sequences.
The vectors of 11780 values for each type of motif are compared between different proteomes.
Related(20)
motif is preferred
motif is measured
motif is distinguished
motif is evaluated
ground is compared
motif is comprised
rationale is compared
motif is combined
design is compared
pattern is compared
matter is compared
motif is played
motif is forgotten
motif is echoed
motif is indicated
motif is shaded
motif is called
motif is boxed
motif is carried
motif is overlaid
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