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Some tribes used the triangular motif in conjunction with an S-shaped double-spiral design on tobacco pipes, hand drums, and bark paintings.
In nearly all identified cases (21/22), the M4 cluster was located upstream of its associated M1 cluster, suggesting that the M4 cluster may target the upstream TAG motif in conjunction with the 5′ region of the M1 cluster.
First, changes in the previously identified YXYXXV motif in conjunction with a lengthened TM domain, which itself may be expected to alter the conformation of the cytoplasmic tail, are required to confer levels of signaling activity seen in cpz-tetherin.
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This motif appears in conjunction with many different motifs upstream of clusters with very different expression profiles (Additional file 1: Table S4).
On the electrocatalytic side, there have been advances in optimization of known rhenium motifs sometimes in conjunction with silicon photoelectrodes giving enhanced catalytic current and stability.
Here, we show a dissection of the Txnip promoter in a detailed manner, which reveals a requirement for tandem ChoRE and CCAAT motifs that in conjunction with associated factors support optimal Txnip expression outputs in response to glucose or adenosine-containing molecules.
This motif is often found in conjunction with one or more binding domains such as those for cytochrome b5, ferredoxin, and binding sites for the NADPH cytochrome P450 reductase that contains FAD (flavin adenine dinucleotide) and FMN (flavin mononucleotide) [ 11].
The significance of such regulatory motifs has been probed in conjunction with the varying stoichiometry of interaction in the Kis Kid module.
This motif location information was used in conjunction with ChIP-seq signal to manually annotate promoters and regulatory variants.
A very recently published study took a fourth approach, analyzing phylogenetic conservation, in conjunction with motif searching and published microarray data to predict ACS locations [ 43].
Epigenetic motifs can also be detected in conjunction with de novo assembly using PacBio sequencing, as was done for Helicobacter pylori.
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