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Sylamer estimates for enrichment of an RNAi motif given a list of differentially expressed gene identifiers and reports any RNAi induced bias within a composite plot of the hypergeometric p-values estimated for all other nucleotide "words" of the same length (as the seed query sequence).
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Additionally, the motif gave a sense of life to the symbiote, giving it the appearance of gripping onto the character's body.
(3) evolution feature = { 0 the maximal conservation score of similar motifs Given a TF and its 10 DNA target sets (each set included positive and negative instances), first, three scores were calculated for each instance according to the three features.
The temple's facade has traditional ethnic decorative motifs, giving an erroneous impression that it may be a Hindu catering hall or restaurant.
While the LCYB conserved motifs gave an indication of the enzymatic function of the encoded protein, they could not fully determine or reflect its cyclic function in vivo.
When we compute the fitness (IC score) of a motif given all the binding sites, we consider all columns, because in this case we have all the information to derive a PWM.
We took an iterative approach that alternates between: 1) optimization of parameters specifying sequence degeneracy and structural context given a sequence motif, and 2) search of optimal sequence reference motif given the estimated parameters by evaluation of each motif candidate's contribution to binding affinities of positive gold standard sequences.
At Lacoste, the history of tennis and of the crocodile motif were given a sharp and powerful serve by the designer Felipe Oliveira Baptista.
Finally, mutation to Ala of the Ser residues in the SerZip motif gave rise to a relatively small decrease in the stability of the dimer, indicating that packing interactions rather than hydrogen-bonding provided the primary driving force for association.
Given that nearly all the verified sites within known in vivo targets possess a hydrophobic residue (V, I, F) at position +1, the search motif gave preference to sites with a hydrophobic residue at the +1 position.
Given a motif, the motif profile denotes the presence or absence of the motif in each protein sequence.
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