Sentence examples for motif finding using from inspiring English sources

After masking repeats to N, we performed de novo motif finding using MEME ver. 4.3.0 with the sequences.

This approach models the motif finding using tree-based data structure and uses tree-based algorithms to solve the motif detection.

(ii) Motif finding using oligo-counting seems to work considerably better in combination with SVMs than Gibbs sampling, except on the control.

Al-Turaiki et al. modelled the motif finding problem using Trie data structure and transformed the motif finding into mining frequent patterns in large datasets [ 14].

The motif finding also used complementary criteria for detecting the motifs [ 11].

Practically all motif finding methods use some form of supervised learning (training from known data) [ 59- 61].

The de novo motif finding was performed using i-CisTarget [ 37].

We also performed comparisons for nine motif finding Web tools using five different datasets from ChIP-Seq experiments.

In this work, we develop a novel motif finding algorithm (PSO+) using a population-based stochastic optimization technique called Particle Swarm Optimization (PSO), which has been shown to be effective in optimizing difficult multidimensional problems in continuous domains.

For selected clusters, motif finding algorithms were used to uncover additional potential cis-elements using the MEME and RSAT tool suites [ 60, 61].

Identification of shared amino acid motifs across the entire BCR sequence can be carried out using widely used motif finding tools [ 113].