Sentence examples for motif finding software from inspiring English sources

For example, the popular motif finding software MEME [4] is packaged with the MAST software [5].

Various motif finding software programs typically yield candidate cis elements not entirely consistent with each other due to the differences in their underlying statistical algorithms.

We introduced a methodology based on dictionaries, and an efficient motif-finding software application for comparative genomics.

Further, the motif-finding software TFM-Explorer was able to predict nearly all of these promoters as containing NF κB motifs, even when known NF κB target promoters were removed from the test set.

Next, we analyzed Klf5-ChIP target sequences with the motif-finding CisFinder software to search for over-represented motifs.

We only presented the general idea that the result of peak calling tool used for finding motifs has an influence on the result of motif finding and suggested the users to consider software tools that are able to assist them for optimizing the peak calling results relevant to their data's property.

In [22], they find that the motif finding effort is greatly enhanced by referencing to nearby gene structure and identifying "peak regions" where motifs can be isolated.

We observed that newer motif finding Web tools have the capability to find global over-represented motifs, local over-represented motifs, and alternative motifs.

To predict modified motifs, we screened the Modifications.gff file by using publicly available R-scripts software (https://github.com/PacificBiosciences/motif-finding), as well as an online motif finding server (MEME, http://meme.nbcr.net/meme/cgi-bin/meme.cgi) [ 38].

The implementation of motif finding relies on a combination of tried and tested algorithms, which integrated in the software suite RSAT.

They reported that most current motif finding algorithms are incapable of detecting the target motifs in their Challenge Problem.