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On the other hand, our algorithm is not connected with a particular motif extraction program, and uses a most general motif representation, the list of the allowed words [ 35], as input.
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We use CPs extracted by MEX (Motif Extraction algorithm) to study evolutionary processes in olfactory receptors.
The Feature Extraction program was used to extract the spot intensities.
We extract deterministic motifs from ORs belonging to ten species using the MEX (Motif Extraction) algorithm, thus defining Common Peptides (CPs) characteristic to ORs.
In ExMotif: Efficient Structured Motif Extraction, Yongqiang Zhang and Mohammed J. Zaki [ 3], describe a new algorithm called EXMOTIF to extract frequent motifs from DNA sequences.
The extrapolated rank estimation for motif extraction was 1,286.
According to results, one can consider the proposed cross domain workflow motif extraction as a potentially useful alternative to traditional approaches focusing just on one domain.
In the structured motif extraction problem, the component motifs M i are unknown before the extraction.
Three procedures are widely employed to identify motifs: sequence alignment, motif extraction and motif search.
Motif extraction was then performed again using MEME to identify other consensus motifs among mouse sequences of the MafB binding gene set with the MafB motifs.
Another option amounts to interleaving simple motif extraction and list intersection.
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