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In contrast, the CDR2 are always three AA in length with the typical QXS motif (except for the TRDV1S18 gene).
All family members encode a single motif except for one of the mouse genes, ISG12(b), which encodes two.
Search for novel elements using the MEME motif discovery tool [ 18] did not find any additional motif, except for the ubiquitous Sp1 signature in several sets.
TBC1D1 Ser on endogenous TBC1D1 was identified through MS [ 21], and this phosphorylation site is a consensus match for the AMPK phosphorylation motif, except for the lack of one basic residue at either the −3 or −4 position.
Accordingly, all 233 class-1 coronins have the classical motif, except for DpCoro1B and DrpCoro1B (Drosophila pseudoobscura and persimilis; Lys at position 1), and NvCoro1 (Nematostella; Cys at position 2), and are thus predicted to form trimers.
BLAST analyses of short peptide sequences with TRDFLG, TLDFLG and TQDFLG as a query sequence show no other type of protein consistently harboring this motif except for IDD genes from higher plants.
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RF2 is expected to function by interacting with other proteins, because RF2 has no motifs except for glycine-rich domain.
RF2 is expected to function by interacting with other proteins, because mature RF2 is a small protein that putatively consists of 80 amino acids after removing a predicted mitochondrial targeting signal sequence; it has no motifs except for a 29-amino acid long glycine-rich domain (Itabashi et al. [2011]).
For every syllable, frequency was higher in USVs recorded from the wild when compared to the laboratory and this difference was significant for every syllable across all motifs except for the first syllable of 3SVs that neared significance (p = 0.0114; Table 1, Table 2, Table 3; Figure 2).
For hexamer motifs, no motifs except for AAAAAA and TTTTTT reached 0.2% (Additional file 5).
The HbNIPs have typical dual NPA motifs except for HbNIP4 1, HbNIP5 1 and HbNIP6 1 (Table 2).
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