Sentence examples for motif enrichment in from inspiring English sources

Motif enrichment in foreground sets against background sets was measured using classification relative error rate (err), where relative error rate is computed as the average of the false positive and false negative rates [11].

Motif enrichment in the 3′ ends of protected transcripts.

(A ) Promoter motif enrichment in genes upregulated in miR-1 double-knockout hearts.

There is statistically significant TATA motif enrichment in State 1 (p-value = 2.42·10-7).

(XLS 169 kb) Additional file 11: Motif enrichment in the ZR-75-1 ChIP-sequencing datasets.

Motif enrichment in Y1H data is presented in Figure 7 figure supplement 1.

Despite the difference in absolute motif enrichments in different enhancer regions, we find that the relative motif enrichments are strongly preserved.

The heatmaps highlight the relative motif enrichments in enhancers between and within the cell types, capturing known biologically relevant cell-TF associations.

Heatmaps are symmetric with duplicate rows to ensure the diagonal represents TF-motif enrichment in it's matching data set(s).

In order to study the motifs enrichment in functional gene sets, we used gene ontology (GO) functions from P. falciparum v6.0 together with ontology-based pattern identification (OPI) clusters from [ http://carrier.gnf.org/publications/OPI/] to retrieve a total of 13,859 GO/gene pairs, with 1288 distinct GO names.

The motif enrichment analysis in the OsEULS3 regulon identified only two significantly enriched elements in the OsEULS3 promoter: a PALBOXAPC motif and a binding site for the Arabidopsis response regulator ARR11.