Sentence examples for motif discovery methods from inspiring English sources

FoldMiner is unique among such algorithms in that it improves both the motif definition and the sensitivity of a structural similarity search by combining the search and motif discovery methods and using information from each process to enhance the other.

A good overview of motif discovery methods and applications is provided in [7].

This platform allowed us to estimate the accuracy of our motif discovery methods.

We clustered test sets and motif discovery methods according to motif discovery success; see Figure 3.

Expression, binding, and cross-species conservation data have all been used to guide motif discovery methods.

First, we apply two traditional motif discovery methods, namely MotifSampler [38] and oligo-analysis [39] to each Dmel training set.

Computational predictions rely on sequence specificities that are typically taken from a database [4] or obtained as an output from a motif discovery method [6].

WaRSwap is a randomization algorithm that for the first time provides a practical network motif discovery method for large multi-layer networks, for example those that include transcription factors, microRNAs, and non-regulatory protein coding genes.

We therefore reasoned that a multiple species motif discovery method might increase performance.

By gradually forcing all pseudo counts to be equal (unity), i.e., increasing the uncertainty, the Bayesian binding prediction method indeed turns into a pure motif discovery method.

Using MEME and COVE, we explain our next method, CMfinder, a state of the art motif discovery method.