Sentence examples similar to motif discovering algorithms from inspiring English sources

The third best motif discovered by MEME is as well found by our algorithm.

The first motif discovered (motif P1) is most similar to the GCN4-like motif (GLM).

The third motif discovered in Fabaceae (motif F3), and the fourth motif discovered in Poaceae SSP gene promoters (motif P4), are highly similar to a TATA-box motif (CTATAAATA).

Therefore, the presence of GATA enriched motifs discovered by both algorithms in a NiR gene cluster lends substantial support to the validity of these putative motifs.

Sequence logos representing the motifs discovered by both algorithms are shown in Figure 2. Similar improvements in performance are also seen for the E. coli FruR and RscB motifs.

Harbison et al 26 combined ChIP-chip data, six motif-discovering algorithms, and phylogenetic conservation to construct an initial map of yeast's transcriptional regulatory code.

The predictions are compared to PROSITE patterns and the motifs discovered by motif-finding algorithms, RISOTTO, Pratt, and Teiresias.

Finally, motifs discovered in various microarray experiments by the REDUCE algorithm [17] were added.

To further understand the cis-regulatory evolution, we explored the sequence evolutionary trend of 10-mer DNA motifs, discovered in a subset of the CNE enhancer data set using the MEME motif discovery algorithm (Bailey and Elkan 1994).

This matrix-like table lists the proportion of motifs discovered by tool X that are also discovered by tool Y.

For the 1000 bp dataset, we discovered 394 motifs, which include all of the 326 motifs discovered in the 600 bp dataset.