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This uncertainty could be surmounted in a timely and cost-effective manner by use of motif detection protocols to sift through large amounts of DNA sequence data.
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Motifs in the promoter regions of the differentially expressed RefSeq genes were detected using the MEME motif detection program [ 32].
De novo motif detection using these regions by peak-motif detected ETS⇔CRE motif as the best-enriched motif.
We used the network motif detection tool FANMOD FAst Network MOtiff Detection) 20 for detecting motifs in all networks in Table 1.
The idea of k-assembly is related to motif detection [26].
In 2000, Pevzner and Sze proposed the Challenge Problem of motif detection.
PCR-based detection protocols amplify different target sequences.
This article has described different detection protocols and their issues.
Performance evaluation of our protocol shows that the hole detection time and energy consumption due to hole detection outperforms over similar hole detection protocols.
The 'performance measures' describe whether the motif detection tool is able to retrieve the motif model of the embedded motif in a particular test.
To this end we have developed DEMON, a novel method for motif detection.
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