Sentence examples for motif database using from inspiring English sources

Selected motifs were searched for their presence against the preexisting motif database using TOMTOM [ 34].

Searching these motifs in motif database using TOMTOM [ 34] results in identification of motif M6 associated with pyrR (transcriptional attenuator and uracil phosphoribosyltransferase activity) regulated function, similar to sRNAs (SN12 and SN42) predicted function.

In addition to comparisons with the NR protein database, these conceptual translation products were also compared to GO and protein motif databases using RPS-BLAST, in support of manual annotation.

The predicted DNA motifs can be matched against known motif databases using STAMP [ 43].

Promzea's output was compared to known promoter motif databases using STAMP [ 54].

Comparison of the motifs in the FIE-HA+H3K27me3 FIE-HA+H3K27me3databases using TOMTOM identified motif 2 as similar to the TBF1 binding site (telobox factor 1), motif 3 as similar to a zinc finger peaksin binding sito and motif 4 as similar to the GAGA Factor 1/Trithorax-like bindatabases (Additional file 12: Figusing7).

The ESTs from Botryllus rejection library were subjected to protein motif analysis against InterPro database, using InterProScan software (local installation).

The predicted motifs were compared with the biologically known motifs in the TRANSFAC database using the procedure previously published [ 23].

Motifs predicted by Promzea were compared with experimentally defined motifs in the PLACE database using STAMP [ 27].

Catfish conserved regulatory motifs were identified by comparison with experimentally validated regulatory motifs deposited in UTRsite database using pattern search program UTRscan.

Thirty nine sequences were retrieved from the EST database using motifs 11, 13 and K.