Sentence examples for motif class using from inspiring English sources

Likewise, the Mutation class was linked to Motif class using the locatedIn relationship.

Closer analysis of these motif classes using D. pulex genome annotations [ 15] reveals that the overrepresented motifs are protein coding sequences of tandemly repeated amino acid motifs found in multiple copies that are spread across the genome.

In addition, we replaced the Subdomain class used in the previous version of ProKinO with the Motif class and introduced its two subclasses: Sequence Motif and Structural Motif.

Motif pairs were classified into three classes using the following variables and the procedure shown in Figure 2. To characterize the patterns observed in the heat maps (e.g., Figure 1), 'high-scoring' regions (region-pairs) were defined.

We implemented each instance of the Structural Motif class as a collection of Sequence Motif instances, linked using the contains relation.

This work used the same kind of null-hypothesis model to show that not all constituents of a given motif class are equally unexpected.

Among those, we distinguish five functional classes of motifs using chemical synapses (directed edges) only, shown in Fig. 5.

Using the Gene and Sequence Motif classes and the locatedIn relation between them, we queried for the structural location of the arginine variants in EGFR (Fig. 5C).

The significantly enriched phosphorylation motifs were extracted from phosphopeptides with unambiguous phosphorylation sites (class I) using the Motif-X algorithm [ 33].

A boosting approach for motif modeling using ChIP-chip data.

Overrepresented sequence motifs were extracted using Motif-X [28].