Sentence examples for motif analysis using from inspiring English sources

Authors applied several tools, such as gene ontology (GO) pathway enrichment analysis, motif analysis using the motif-x algorithm [75 77].

To determine if specific kinases were activated by exposure of cells to 2 or 50 cGy ionizing radiation, we performed a kinase motif analysis using the Scansite website (http://scansite.mit.edu[21]).edu[21]

(A ) Motif analysis using the FIMO/MEME algorithm.

Top result from the discriminatory sequence motif analysis using DREME software.

The results here correlate well with the results obtained from motif analysis using Scan Prosite.

We subjected sequences from each clade to motif analysis using MINER v2.0 [ 16- 18].

As p63 binding alone does not explain epidermal gene expression, we searched for potential p63 co-regulators by transcription factor motif enrichment analysis using position weight matrices (PWM) of known transcription factor family motifs (threshold, P-value = 0.01, 1.5-fold enrichment versus background) [ 35].

Motif enrichment analysis using the MICRA tool (Southall and Brand 2009) revealed enrichment for the motif ATGCGGG at the loci bound by the Dam-Gcm fusion.

CentriMo is a web-based visualization and statistical analysis tool for performing several types of motif enrichment analysis using one or two sets of equal-length DNA or RNA regions and sets of annotated motifs.

For Ubx, we used the top 300 binding peaks and performed motif discovery analysis using nestedMica [50] for the embryo and haltere data separately.

We also performed a motif discovery analysis using the genes that are regulated but not bound under high activity conditions.