Sentence examples for motif analysis to from inspiring English sources

These findings are consistent with a number of other studies in plants that have used promoter motif analysis to link gene groups to defined biological processes [11, 31].

Using clustering and motif analysis to divide genes into sets of putatively functionally related genes, and applying prior knowledge regarding the function of the known motifs, it becomes possible to propose annotations for previously unannotated genes.

Using oPOSSUM, we performed motif analysis to find Sp1 response elements (RE) in p53-bound genes.

Next, we conducted a TF motif analysis to assess Poly (I C)- and LPS-induced gene expression in BV-2 microglial cells.

467 putative enhancer regions with Enh probability greater than 0.9 (45% C + G) were used in the motif analysis to narrow down the search.

To limit the motif analysis to regions pulled down by ChIP, the analysis was limited to sequences contained within each peak using the '-size given' option.

Based on protein motif analysis 10 to 12 putative acidic invertases are found in the grape genome sequence [33].

The sequence motif analysis serves to pinpoint the exact location of binding sites in potential target regions obtained by ChIP.

Performing a sequence motif analysis similar to that of Lundby et al. (47), Chen et al. (11) identified multiple motifs that are regulated by SIRT1.

Genes that were considered significantly differentially expressed by microarray were analyzed by BoBro and a motif analysis toolkit to identify potential cis regulatory motifs [ 50, 51].

Furthermore, TF motif analysis (-950 to +50 bp of the 5′ upstream promoters) revealed that the DNA sequences for NF-κB, IRF1, and STAT1 were significantly enriched in TLR3- and TLR4-stimulated microglia.