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Machanick, P. & Bailey, T.L. MEME-ChIP: motif analysis of large DNA datasets.
Battiston, F., Nicosia, V., Chavez, M. & Latora, V. Multilayer motif analysis of brain networks.
Extended Data Fig. 8 Transcription factor motif analysis of active enhancer regions.
(a) HOMER motif analysis of LSD1 ChIP-seq data unravel Nrf1 binding sites among the top scoring motifs.
Former research topics (MS and PhD) include: (1) development of data analysis algorithms, including quantum clustering and the unsupervised feature filtering algorithm; and (2) motif analysis of protein families.
Haplogroup motif analysis of the coding region and HVS should also be performed to improve the reliability of forensic mtDNA data.
The alignment and motif analysis of sequences by BioEdit and DNASIS MAX software showed incidence of 11 single nucleotide polymorphism (SNP) and 18 DNA motifs in EDG1 marker site.
Information-theoretic motif analysis of the resulting sequence-to-gene-expression mapping revealed linear and structural RNA cis-regulatory elements that positively and negatively modulate the posttranscriptional fates of human transcripts.
Fig. 4 Distribution and motif analysis of lysine acetylation sites.
Motif analysis of 38 sequences showed that all the aptamers had high (∼70%) G content and contained a conserved GGXGG motif.
Other classifications exist (such as into ten different morphological classes [25]), but the motif analysis of graphs with more than three colors quickly becomes computationally cumbersome.
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