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(E ) Top: contact map of the contigs present within the community containing mostly sequences from N. castellii.
The branch of KatGs from Proteobacteria in minor Clade 2 contains mostly sequences from various pathogens of human, animal, plants, and even protists.
The first subclade within the clade I contains sequences only from angiosperm plants and the average maximum-likelihood branch length is shorter than that of the other subclade, which contains mostly sequences from mosses.
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The RDP-classifier is trained with more than 7,000 bacterial full-length SSU rRNA sequences, composed mostly of sequences from type strains.
Novel non-coding repeats were detected by BLASTN against a set of 315 publicly available large genomic (mostly BAC) sequences from Triticeae (see Additional file 1).
H5g1 is mostly composed of sequences from North America with a small number from Asia, while H5g2 is mainly composed of sequences from Eurasia and Africa and most of them are H5N1 subtype.
The HMM-logo based on Pfam covers mostly Baculoviridae and sequences from few insects (Aphid and Mosquitos).
The influenza A(H5N1) virus genealogical tree notably contains long side branches; some lineages (mostly comprising hemagglutinin sequences from Southeast Asia, Africa, and southern Asia) persist for years.
As stated previously, these mostly concerned closely related sequences from L. major and T. cruzi, and so the would-be ortholog in T. brucei was lost.
In regions A and B sequences from mostly γ- (74%) and α-proteobacteria (19%), but also a few β-proteobacterial (5%) and bacteroidetes (1.5%), are present.
The genetic data available for those species up to date are mostly composed of nucleotide sequences from a single mitochondrially encoded gene: the mt-cyb, which is maternally inherited and thus provides insufficient evidence for resolving their phylogenetic relationships.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com